PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G25480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 123aa    MW: 13119 Da    PI: 9.7144
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G25480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC94.21.1e-29221141999
            NF-YC  19 helPlarikkilka...dedv.........kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      h+lPlarikki+k    d  v         +mis eaPv++skacelfi elt r+w  +   krrt++k d+aaav++td fdflvd+v  d
  OMERI04G25480.1  22 HALPLARIKKIMKRsagDSGVsvvdggggaRMISGEAPVVFSKACELFIAELTRRAWAATLVGKRRTVHKEDVAAAVQNTDLFDFLVDVVTAD 114
                      89***********733333332234444448**********************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.43E-2418107IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-301999IPR009072Histone-fold
PfamPF008081.7E-115098IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGDS GVSVVDGGGG ARMISGEAPV  60
VFSKACELFI AELTRRAWAA TLVGKRRTVH KEDVAAAVQN TDLFDFLVDV VTADLGDDHT  120
DYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-242211140117HapE
4g91_C2e-242211140117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880470.0AB288047.1 Oryza sativa Japonica Group OsHAP5G gene for HAP5 subunit of HAP complex, complete cds.
GenBankAL6066410.0AL606641.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635297.14e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG74e-30NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0E0DKD41e-85A0A0E0DKD4_9ORYZ; Uncharacterized protein
STRINGBGIOSGA014063-PA7e-76(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-30nuclear factor Y, subunit C2